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INSCYTE Corporation |
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2 Berkeley
Street, Suite 403, |
Cervical Cytology Database Statistics
Volume 4, Number 1, December 31, 2000
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Prepared by: Artificial Intelligence in Medicine Inc. Copyright © 2001 INSCYTE Corporation All rights reserved. |
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Title: |
CytoBase Report Cervical Cytology Database Statistics January 1st, 2000 through December 31st, 2000 |
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Prepared By: |
Natalia Hakh (AIM) |
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Approved By: |
Data Review Committee |
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Compilation Date: |
June 9, 2001 |
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Version Number: |
Vol. 4, No. 1 |
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Date of Release: |
June 15, 2001 |
This report presents database statistics for the period starting January 1st, 2000 through December 31st, 2000 representing the statistics for 2000. This report produced by INSCYTE* Corporation contains only a subset of the information that the CytoBase system is capable of providing.
All information in the database is from sources deemed reliable but no warranty or representation is made as to the accuracy thereof, thus reports submitted may be subject to errors and/or omissions beyond the control of INSCYTE Corporation.
The CytoBase Report is copyrighted by INSCYTE Corporation. The copyright holders grant to all parties, without written agreement and without license or royalty fees, limited rights to use, copy, and distribute for any purpose, so long as copyright is acknowledged on all copies and excerpted materials (e.g. CytoBase Report Vol. 4 No. 1 Copyright Ó INSCYTE Corp. - Used by permission)
Copyright © 2001 INSCYTE Corporation
Information Systems for Cytology Etc.
Table of Contents
2000 CytoBase Report Highlights. 1
Legend for Diagnostic Classes. 4
CytoBase Technical Summary (as of May 3rd, 2001) 5
Distribution of the Most Severe Diagnosis for Women by Age and Class. 7
Distribution of Women with Diagnosis of ASCUS or AGUS by Age. 8
Distribution of Women with Diagnosis of Low Grade or High Grade Squamous Intraepithelial
Distribution of Women with Cytological Diagnosis of Carcinoma by Age and Cell Type. 10
Distribution of Women by Age as a Percentage of the Female Population of Ontario. 11
Distribution of Reports by Age and Diagnostic Class. 12
Specimen Adequacy Statistics. 13
Reason for Specimen Limitations. 14
Reason for Specimen Inadequacy. 15
Cumulative Database - Distribution by Age and Diagnostic Class. 16
CytoBase is a patient-centered computerized medical record of Cytology reports with on-line submission and query capabilities. The system was designed, developed and made operational by Artificial Intelligence In Medicine Inc. (AIM), a Toronto based software engineering firm under contract to INSCYTE Corporation, a not for profit organization formed by six private medical laboratories1 and subsequently Cancer Care Ontario. The system started operations on June 1, 1996.
Participating laboratories automatically download all cervical cytology results and related patient data to the central database on a daily basis. The system software automatically registers new patients and links reports to patient records. Cytotechnologists and pathologists reading smears at the participating laboratories have on-line access to this database to improve diagnostic accuracy, and ensure that pre-neoplastic and neoplastic lesions are not overlooked.
All cervical/vaginal cytologic specimen diagnoses are based on The Bethesda System for Reporting Cervical/Vaginal Cytologic Diagnoses (The Bethesda System), which are categorized as follows:
| 1. | WNL: | Within Normal Limits |
| 2. | BCC: | Benign Cellular Changes |
| 3. | ASCUS: | Atypical Squamous Cells of Undetermined Significance |
| 4. | AGUS: | Atypical Glandular Cells of Undetermined Significance |
| 5. | LSIL: | Low Grade Squamous Intraepithelial Lesions |
| 6. | HSIL: | High Grade Squamous Intraepithelial Lesions (including carcinoma in situ) |
| 7. | Ca: | Carcinoma |
| 8. | Oth.Mal.: | Other Malignancies (including sarcoma) |
| 9. | Oth.Ab.: | Other abnormal cells seen (not otherwise classified) |
In the diagnostic statistics presented herein, where a report includes findings falling into more than one classification, only the most severe class is included in the count. In the event that a report includes “other abnormal cells” (item 9) in combination with one or more of items 2 through 8, only the most severe of classes 2 through 8 is counted.
Each CytoBase report also contains the following information (to the extent that it has been provided by the source):
| a) | Detailed description of specimen adequacy or limitations thereof |
| b) | Diagnostic classification according to the CytoBase Abstract Coding Syntax based on the Bethesda System (Please refer to the INSCYTE Website www.inscyte.org) |
| c) | Identification of specimen collection method |
| d) | Identification of slide preparation (e.g. traditional or monolayer) |
| e) | Identification of analysis method (e.g. microscopic, automated, computer assisted) |
| f) | Pathologist’s recommendations (e.g. repeat smear in # months, colposcopy, biopsy, curettage, etc.) |
| g) | Pathologist’s comments |
| 1 | Med-Chem Laboratories Ltd. The Dynacare Health Group Inc. Excel Bestview Medical Laboratories Ltd. Flemingdon Medical Laboratories Ltd. Gamma North Peel Laboratories Ltd. MDS Health Group Inc. |
Performance:
| Min. Report Transmission Speed: | 229 reports per minute at 44,000 BPS (average) |
| Auto-Registration Rate: | 50 patients reports per minute (average) |
| Rejection Rate: | 0.6% average (primarily due to missing information or format errors) |
| Registered Reports: | 5,195,522 |
| Registered Patient ID’s: | 2,798,741 |
| System Capacity: | 10 million reports on current storage devices 5 million women on current storage devices |
Hardware & Software:
| Production Server | |
| CPU: | Compaq Alpha Server ES40 AXP 64-bit RISC @ 233 MHz |
| Memory: | 512 Mbytes RAM |
| Operating System: | Compaq TRU-64 UNIX (copyright © Compaq) |
| Database System: | Oracle 8i - v8.1.6 RDBMS (copyright © Oracle Corporation) |
| Application Software: | ISIS-CSP (copyright © AIM Inc.) ISIS-CEI (copyright © AIM Inc.) ISIS-CY_CDR (copyright © AIM Inc.) TransMed EDI (copyright © AIM Inc.) |
| Disk Capacity: | 48 Gigabytes |
| Network Protocol: | TCP/IP |
| Messaging Protocol: | HL7 Version 2.3 |
| Fault Tolerance: | RAID Level 1 & 5 Hot Swap, UPS, auto-shutdown and auto-backup, advanced replication |
| Security: | PKI based private key, public key, and session key |
| Mirror Server | |
| CPU: | Digital Equipment Alpha AXP 64-bit RISC @ 233 MHz |
| Memory: | 256 Mbytes RAM |
| Operating System: | Compaq TRU-64 UNIX (copyright © Compaq) |
| Database System: | Oracle 8i - v8.1.6 RDBMS (copyright © Oracle Corporation) |
| Application Software: | ISIS-CSP (copyright © AIM Inc.) ISIS-CEI (copyright © AIM Inc.) ISIS-CY_CDR (copyright © AIM Inc.) TransMed EDI (copyright © AIM Inc.) |
| Disk Capacity: | 28 Gigabytes |
| Network Protocol: | TCP/IP |
| Messaging Protocol: | HL7 Version 2.3 |
| Fault Tolerance: | RAID Level 1 & 5 Hot Swap, UPS, auto-shutdown and auto-backup, advanced replication |
| Security: | PKI based private key, public key, and session key |
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Participating Laboratories |
Date of First Transmission to CytoBase |
Specimen Date of Reports From |
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Gamma North Peel Laboratories Ltd. |
Jun. 9, 1996 |
Jun. 1, 1993 |
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Flemingdon Medical Laboratories Ltd. |
Jun. 11, 1996 |
Apr. 15, 1996 |
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MDS Laboratories |
Oct 10th, 1996 |
Oct 2, 1996 |
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Gamma-Dynacare Medical Laboratories Airport Division |
Nov. 22, 1996 |
Nov. 14, 1996 |
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Excel Bestview Medical Laboratories Ltd. |
Mar. 17, 1997 |
May 5, 1992 |
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Gamma-Dynacare Medical Laboratories Ottawa Division |
Jul. 15, 1998 |
Jan. 19, 1998 |
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Gamma-Dynacare Medical Laboratories Windsor Division |
Aug. 17, 1999 |
May 12, 1999 |
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Canadian Medical Laboratories |
Dec. 22, 1999 |
May 11, 1999 |
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Medical Laboratories of Windsor |
Oct. 19, 2000 |
Feb. 5, 1999 |
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* Laboratories now merged with others.
The following tables and figures categorize women by the most severe diagnosis for the period of time specified (January 1, 2000 to December 31, 2000) and the woman’s age. The age is calculated based on the woman’s date of birth at the time the specimen was taken with the most severe diagnosis.
January 1, 2000 to December 31, 2000
In the diagnostic statistics presented herein, where a women has two or more reports, only the most severe class is included in the count.
Women Based Statistics
Atypical squamous cells of undetermined significance account for 2.44% (33,593) of reported findings.
Atypical glandular cells of undetermined significance account for 0.42% (5,773) of reported findings.
Women Based Statistics
Low grade squamous intraepithelial lesions account for 1.11% (15,244) of reported findings.
High grade squamous intraepithelial lesions account for 0.36% (4,937) of reported findings.
Women Based Statistics
Carcinomas account for 0.01% (172) of reported findings.
A cytological diagnosis was made of
Women Based Statistics
1 Taken from Total by Age Group of the Distribution of the Most Severe Diagnosis for Women by Age and Class (page 11)
2 Demography Division, Statistics Canada: preliminary post-census estimates for 2000 Ontario population.
Specimens Received from January 1, 2000 to December 31, 2000
1 The “other abnormal” category includes findings and/or suspicion of abnormalities that were not formally classified.
2 The total number of reports in the above table is less than the number of reports received (1,438,948) because the age of the woman (1,243), or the diagnostic class according to The Bethesda System cannot be determined (22,626) from submitted information. Unsatisfactory reports, which included a diagnosis, are used in the above table and are allocated to in the appropriate age and diagnostic category.
Report Based Statistics
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Of the total number of reports (1,438,948) in the interval examined, there were 76.43% reports (1,099,806) with no limitations. These included 6,293 (0.57%) reports in which clinical information was missing. Of the remaining reports, 22.94% (330,030) were limited in some way and 9,112 (0.63%) were deemed unsatisfactory for cytological evaluation. |
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Report Based Statistics
Reason for Specimen Limitations
*This total includes 6,293 reports with missing clinical information.
Report Based Statistics
*Includes unsatisfactory specimens with a diagnosis
Reports Received from June 1,1996 to December 31, 2000 as of May 3, 2001
1 The “other abnormal” category includes findings and/or suspicion of abnormalities that were not formally classified.
2 The total number of reports in the above table is less than the number of reports received because the age of the woman, or the diagnostic class according to The Bethesda System cannot be determined from submitted information. In addition, reports were classified as unsatisfactory and are not included. If a report is classified as unsatisfactory but a diagnosis is included, the specimen adequacy is disregarded and the diagnosis is used in the above table in the appropriate age and diagnostic category.
A comparison of Cumulative Data from previous CytoBase reports may show changes in classification due to reports that were subsequently amended.